Variant report

Variant	rs6106665
Chromosome Location	chr20:23453247-23453248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12329513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12329580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12329581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12329582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12329588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12329592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2983280	0.84[AFR][1000 genomes]
rs6036416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6036417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6036419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6048804	0.82[AFR][1000 genomes]
rs6048805	0.91[AFR][1000 genomes]
rs6048815	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6048816	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6106657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6106661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6106664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114106	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114108	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114109	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114110	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114118	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114119	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114120	0.87[AFR][1000 genomes]
rs6114122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114127	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114128	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114129	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114130	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114134	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063655	chr20:23396649-23489730	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv912818	chr20:23406519-23567838	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv912819	chr20:23406519-23569400	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv912820	chr20:23406519-23578148	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv1065390	chr20:23412890-23569238	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1065719	chr20:23415029-23565333	Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv544214	chr20:23415029-23565333	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv470544	chr20:23424638-23569400	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv585722	chr20:23424638-23569400	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
10	nsv458949	chr20:23426648-23569400	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
11	nsv585723	chr20:23426648-23569400	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
12	nsv979404	chr20:23429655-23455778	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv1057992	chr20:23430887-23565333	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
14	nsv544215	chr20:23430887-23565333	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
15	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23441000-23454200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr20:23446600-23465600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr20:23451000-23455200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr20:23451400-23456200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr20:23451800-23453600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr20:23452400-23453600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr20:23452400-23455200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr20:23452600-23455200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr20:23452600-23455200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr20:23452800-23453600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
11	chr20:23453000-23453400	Weak transcription	Fetal Thymus	thymus
12	chr20:23453000-23455000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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