Variant report

Variant	rs6106743
Chromosome Location	chr20:23848024-23848025
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs4458285	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4494832	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4585101	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4815231	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6036557	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6036558	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6036560	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6049175	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6049178	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6049179	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6049181	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6049183	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6049187	0.94[EUR][1000 genomes]
rs6076136	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes]
rs6076138	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6083275	0.93[EUR][1000 genomes]
rs6083276	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes]
rs6083298	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6083304	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6083308	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6114343	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv3336	chr20:23804081-23848943	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv833944	chr20:23806288-24021865	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv585730	chr20:23809681-23862844	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23847000-23848200	Enhancers	H9 Cell Line	embryonic stem cell
2	chr20:23847000-23848200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:23847000-23848400	Enhancers	Fetal Thymus	thymus
4	chr20:23847000-23848800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr20:23847000-23848800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr20:23847000-23849200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr20:23847000-23852400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr20:23847200-23848800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr20:23847200-23849800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr20:23847400-23848200	Enhancers	Dnd41	blood
11	chr20:23847400-23849600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr20:23847600-23848200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr20:23847600-23848200	Enhancers	Thymus	Thymus
14	chr20:23847600-23848600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr20:23847800-23848200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr20:23847800-23848200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr20:23847800-23851600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr20:23848000-23848200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr20:23848000-23848400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr20:23848000-23848400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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