Variant report

Variant	rs6106776
Chromosome Location	chr20:24040887-24040888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16986175	0.84[AFR][1000 genomes]
rs6106769	0.87[AFR][1000 genomes]
rs6106770	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106772	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106775	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6106777	1.00[EUR][1000 genomes]
rs6114432	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063474	chr20:23918394-24048069	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv962543	chr20:24037279-24044544	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24033800-24041600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:24038000-24041600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr20:24040400-24042000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr20:24040600-24041600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr20:24040600-24041600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr20:24040600-24041800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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