Variant report

Variant	rs61069183
Chromosome Location	chr15:43182351-43182352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs35785234	1.00[EUR][1000 genomes]
rs57134347	1.00[EUR][1000 genomes]
rs59226555	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1050128	chr15:43056145-43262736	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv542368	chr15:43056145-43262736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv904134	chr15:43097652-43357406	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv515876	chr15:43116906-43445305	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv904135	chr15:43143998-43392075	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	esv3490431	chr15:43148709-43190630	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3490432	chr15:43148709-43190630	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1036512	chr15:43164906-43274531	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	esv3408090	chr15:43172709-43207571	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3366604	chr15:43172709-43210677	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv3408604	chr15:43175709-43207571	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43132000-43186800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr15:43136800-43182400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:43142400-43182400	Weak transcription	Lung	lung
4	chr15:43151600-43182400	Weak transcription	Aorta	Aorta
5	chr15:43154600-43182400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:43155000-43182600	Weak transcription	Primary T cells from cord blood	blood
7	chr15:43177600-43182400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:43177800-43185400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr15:43178600-43182600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr15:43180200-43185600	Enhancers	Placenta	Placenta
11	chr15:43180800-43182400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr15:43180800-43182800	Weak transcription	Right Ventricle	heart
13	chr15:43181000-43182400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:43181000-43182600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr15:43181000-43182800	Weak transcription	Psoas Muscle	Psoas
16	chr15:43181000-43184000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:43181400-43182400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr15:43181600-43182400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr15:43181800-43182400	Enhancers	NHEK	skin
20	chr15:43181800-43184400	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr15:43181800-43184400	Enhancers	HUVEC	blood vessel
22	chr15:43182000-43182400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:43182000-43182600	Enhancers	H9 Cell Line	embryonic stem cell
24	chr15:43182000-43184000	Enhancers	HMEC	breast
25	chr15:43182200-43182400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr15:43182200-43182400	Enhancers	NH-A	brain
27	chr15:43182200-43182600	Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr15:43182200-43183200	Enhancers	HSMMtube	muscle
29	chr15:43182200-43184000	Enhancers	Muscle Satellite Cultured Cells	--
30	chr15:43182200-43184400	Enhancers	NHDF-Ad	bronchial

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