Variant report

Variant	rs61075759
Chromosome Location	chr6:73425150-73425151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1410764	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16882726	0.89[ASN][1000 genomes]
rs17692655	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17740488	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17796644	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2179952	0.83[ASN][1000 genomes]
rs4706509	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55982853	0.89[ASN][1000 genomes]
rs57838719	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58442660	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62410660	0.93[ASN][1000 genomes]
rs6904964	0.89[ASN][1000 genomes]
rs6924191	0.89[ASN][1000 genomes]
rs73533660	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73533661	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73392400-73429800	Weak transcription	HSMM	muscle
2	chr6:73399400-73429200	Weak transcription	Aorta	Aorta
3	chr6:73399400-73438200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:73421800-73431400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:73422800-73428000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:73423000-73434000	Weak transcription	Primary B cells from cord blood	blood
7	chr6:73423200-73425200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:73423600-73425400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr6:73424000-73426000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:73424800-73425200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:73424800-73425200	Enhancers	NHEK	skin
12	chr6:73424800-73425400	Enhancers	HMEC	breast
13	chr6:73425000-73425200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:73425000-73425200	Enhancers	Psoas Muscle	Psoas
15	chr6:73425000-73425400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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