Variant report

Variant	rs610764
Chromosome Location	chr11:58924288-58924289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:58911417..58912961-chr11:58923652..58925687,2	MCF-7	breast:
2	chr11:58921112..58922649-chr11:58924123..58926292,2	MCF-7	breast:
3	chr11:58918429..58921129-chr11:58923542..58925704,2	K562	blood:

Variant related genes	Relation type
ENSG00000166801	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10792220	0.89[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10896919	0.94[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs10896920	1.00[ASW][hapmap];0.89[CEU][hapmap];0.94[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229864	0.88[CHB][hapmap]
rs12280905	0.94[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs1938590	1.00[ASW][hapmap];0.89[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2096543	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2845559	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs4287350	1.00[ASW][hapmap];0.89[CEU][hapmap];0.94[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.95[TSI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4382926	0.89[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4939257	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs556507	0.88[ASN][1000 genomes]
rs587617	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs592110	0.89[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs680661	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939969	1.00[ASW][hapmap];0.94[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.84[TSI][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	esv2758272	chr11:58700092-59008673	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2759830	chr11:58700092-59008673	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	nsv430388	chr11:58769524-58925824	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58912800-58925800	Weak transcription	Ovary	ovary
2	chr11:58913000-58924600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:58913000-58925800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:58913200-58924400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:58913200-58925600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr11:58913200-58925600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr11:58913200-58925800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:58913200-58925800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr11:58913200-58925800	Weak transcription	Brain Anterior Caudate	brain
10	chr11:58913800-58925800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:58914000-58925800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:58914800-58925800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:58917600-58925600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:58918000-58925800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:58918400-58925800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:58919800-58924800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:58919800-58925600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr11:58920000-58925600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:58920000-58925600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:58920000-58925800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr11:58920200-58925600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr11:58920200-58925600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:58920200-58925600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr11:58920200-58925800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr11:58920400-58924800	Weak transcription	HUVEC	blood vessel
26	chr11:58920400-58925600	Weak transcription	NHLF	lung
27	chr11:58920400-58925800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:58920400-58925800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr11:58920400-58925800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr11:58920600-58925000	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr11:58920600-58925200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:58920600-58925200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr11:58920600-58925600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:58920600-58925600	Weak transcription	Adipose Nuclei	Adipose
35	chr11:58920600-58925800	Weak transcription	Fetal Kidney	kidney
36	chr11:58920800-58924800	Weak transcription	Primary B cells from cord blood	blood
37	chr11:58920800-58924800	Weak transcription	Primary B cells from peripheral blood	blood
38	chr11:58920800-58925600	Weak transcription	A549	lung
39	chr11:58920800-58925800	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr11:58920800-58925800	Weak transcription	Fetal Lung	lung
41	chr11:58921000-58924400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:58921000-58924600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr11:58921000-58924800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr11:58921000-58925600	Weak transcription	Primary T cells from cord blood	blood
45	chr11:58921000-58925600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr11:58921000-58925600	Weak transcription	Dnd41	blood
47	chr11:58921000-58925600	Weak transcription	HMEC	breast
48	chr11:58921000-58925800	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr11:58921000-58925800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:58921000-58925800	Weak transcription	Osteobl	bone

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