Variant report
| Variant | rs61083113 |
|---|---|
| Chromosome Location | chr13:48002622-48002623 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:47998849..48000404-chr13:48002509..48005061,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10507558 | 0.83[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11618099 | 0.83[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11618168 | 0.83[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12585227 | 0.82[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1340342 | 0.83[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1340343 | 0.83[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1340344 | 0.83[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2406331 | 0.83[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4368074 | 0.81[ASN][1000 genomes] |
| rs4627222 | 0.81[EUR][1000 genomes] |
| rs59309287 | 0.94[ASN][1000 genomes] |
| rs7140005 | 0.81[EUR][1000 genomes] |
| rs7317842 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7337528 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7988780 | 0.92[EUR][1000 genomes] |
| rs7994481 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9316293 | 0.83[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9316294 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9534638 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9567854 | 0.83[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9567856 | 0.83[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9567865 | 0.93[ASN][1000 genomes] |
| rs9591064 | 0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2763019 | chr13:47348229-48123447 | Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 2 | esv3394678 | chr13:47678184-48039379 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv3450125 | chr13:47919050-48236684 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv455879 | chr13:47919611-48190106 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv561588 | chr13:47943829-48190106 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:47999800-48003800 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 2 | chr13:48000200-48003400 | Enhancers | Adipose Nuclei | Adipose |
