Variant report

Variant	rs6108838
Chromosome Location	chr20:11125440-11125441
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12624897	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2207420	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2223989	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2223990	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2223992	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3920525	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6033037	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6033038	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6040369	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6040375	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6040378	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6104712	0.91[AFR][1000 genomes]
rs6108835	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6108837	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6108845	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6108847	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6131165	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6134138	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6134140	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62193310	0.91[AFR][1000 genomes]
rs8116949	0.92[AFR][1000 genomes]
rs984849	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs993796	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11123600-11125600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr20:11123800-11125600	Enhancers	NHEK	skin
3	chr20:11124000-11125600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr20:11124200-11125600	Enhancers	HMEC	breast
5	chr20:11124600-11125600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr20:11124800-11125600	Enhancers	Fetal Muscle Leg	muscle
7	chr20:11125000-11125800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr20:11125200-11126800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr20:11125400-11125600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr20:11125400-11125600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr20:11125400-11125800	Enhancers	Osteobl	bone
12	chr20:11125400-11126200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr20:11125400-11126200	Enhancers	NHDF-Ad	bronchial
14	chr20:11125400-11126800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr20:11125400-11134200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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