Variant report

Variant	rs6108844
Chromosome Location	chr20:1167434-1167435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr20:1165038-1167857	HepG2	liver:	n/a	chr20:1165200-1165208
2	MAX	chr20:1166992-1167516	HepG2	liver:	n/a	n/a
3	TBP	chr20:1167217-1167588	HepG2	liver:	n/a	n/a
4	TCF7L2	chr20:1167252-1167690	HCT-116	colon:	n/a	chr20:1167481-1167491 chr20:1167479-1167495 chr20:1167479-1167495 chr20:1167484-1167491 chr20:1167483-1167492 chr20:1167482-1167491 chr20:1167480-1167494
5	RCOR1	chr20:1166531-1167462	HepG2	liver:	n/a	n/a
6	CHD2	chr20:1167070-1167706	HepG2	liver:	n/a	n/a
7	TBL1XR1	chr20:1167350-1167478	K562	blood:	n/a	n/a
8	RFX5	chr20:1166688-1167480	HepG2	liver:	n/a	n/a
9	MAZ	chr20:1166114-1167582	HepG2	liver:	n/a	n/a
10	CTCF	chr20:1167300-1167450	SAEC	small airway:	n/a	chr20:1167418-1167427
11	POLR2A	chr20:1166532-1168701	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:1166329..1168074-chr20:1189249..1191383,2	K562	blood:

Variant related genes	Relation type
TMEM74B	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531450	chr20:809607-1221836	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1058524	chr20:821434-1254865	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv544138	chr20:821434-1254865	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1057939	chr20:824980-1316778	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv912585	chr20:992713-1210647	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1057097	chr20:1030940-1314265	Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3437185	chr20:1164977-1167825	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3448468	chr20:1165152-1167550	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3372799	chr20:1167052-1171250	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:1166000-1169000	Weak transcription	Gastric	stomach
2	chr20:1166400-1167800	Bivalent Enhancer	Fetal Muscle Leg	muscle
3	chr20:1166400-1168400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr20:1166400-1169000	Weak transcription	Pancreas	Pancrea
5	chr20:1166400-1169000	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr20:1166400-1169400	Enhancers	Lung	lung
7	chr20:1166600-1168200	Weak transcription	Left Ventricle	heart
8	chr20:1166600-1168200	Enhancers	Small Intestine	intestine
9	chr20:1166600-1169200	Enhancers	Right Atrium	heart
10	chr20:1166800-1167600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr20:1166800-1167600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr20:1166800-1167800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr20:1166800-1167800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
14	chr20:1166800-1168000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr20:1166800-1168600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
16	chr20:1166800-1169400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr20:1166800-1169400	Enhancers	Liver	Liver
18	chr20:1166800-1169400	Enhancers	Fetal Intestine Small	intestine
19	chr20:1167000-1167800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
20	chr20:1167000-1167800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr20:1167000-1167800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
22	chr20:1167000-1167800	Enhancers	K562	blood
23	chr20:1167000-1168200	Enhancers	A549	lung
24	chr20:1167000-1168200	Weak transcription	Hela-S3	cervix
25	chr20:1167000-1168600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
26	chr20:1167000-1168600	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
27	chr20:1167000-1169200	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr20:1167000-1169400	Enhancers	Duodenum Mucosa	Duodenum
29	chr20:1167000-1169400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr20:1167000-1169400	Enhancers	Fetal Intestine Large	intestine
31	chr20:1167000-1169400	Enhancers	Stomach Mucosa	stomach
32	chr20:1167200-1167600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
33	chr20:1167200-1167600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
34	chr20:1167200-1168200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr20:1167200-1169000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr20:1167400-1167600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr20:1167400-1167600	Enhancers	Right Ventricle	heart
38	chr20:1167400-1167800	Active TSS	ES-I3 Cell Line	embryonic stem cell
39	chr20:1167400-1168200	Weak transcription	Spleen	Spleen
40	chr20:1167400-1168600	Flanking Active TSS	HepG2	liver
41	chr20:1167400-1168800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr20:1167400-1169000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr20:1167400-1169000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr20:1167400-1169000	Enhancers	Fetal Lung	lung
45	chr20:1167400-1169200	Enhancers	Placenta	Placenta

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