Variant report

Variant	rs6108864
Chromosome Location	chr20:11199355-11199356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:10652777..10656154-chr20:11197961..11200828,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101384	Chromatin interaction
ENSG00000270792	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1013499	0.85[ASN][1000 genomes]
rs1884163	0.82[ASN][1000 genomes]
rs1884164	0.82[ASN][1000 genomes]
rs2207101	0.85[ASN][1000 genomes]
rs2207412	0.82[ASN][1000 genomes]
rs4813965	0.83[ASN][1000 genomes]
rs6033055	0.83[ASN][1000 genomes]
rs6040429	0.85[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs6040430	0.85[ASN][1000 genomes]
rs6040435	0.81[CHB][hapmap]
rs6040436	0.82[CHB][hapmap]
rs6078099	0.84[ASN][1000 genomes]
rs6104721	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1056067	chr20:11174581-11213919	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11195000-11199800	Enhancers	Fetal Lung	lung
2	chr20:11195200-11201800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:11195600-11210200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr20:11196600-11199400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr20:11196600-11199400	Enhancers	HUVEC	blood vessel
6	chr20:11196800-11199800	Enhancers	Fetal Intestine Large	intestine
7	chr20:11197000-11200200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr20:11197200-11199600	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr20:11197200-11199800	Enhancers	Primary hematopoietic stem cells	blood
10	chr20:11197200-11199800	Enhancers	Fetal Muscle Leg	muscle
11	chr20:11197200-11200000	Enhancers	Fetal Intestine Small	intestine
12	chr20:11197400-11199400	Enhancers	Fetal Kidney	kidney
13	chr20:11197400-11200000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr20:11197600-11200000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr20:11197600-11200600	Enhancers	Primary B cells from cord blood	blood
16	chr20:11197800-11199600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr20:11197800-11200200	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr20:11197800-11201600	Enhancers	Fetal Heart	heart
19	chr20:11198000-11199400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr20:11198000-11199400	Weak transcription	Right Ventricle	heart
21	chr20:11198000-11199600	Weak transcription	Pancreas	Pancrea
22	chr20:11198000-11201400	Weak transcription	Brain Hippocampus Middle	brain
23	chr20:11198200-11199400	Weak transcription	Left Ventricle	heart
24	chr20:11198400-11199400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr20:11198400-11199600	Weak transcription	Right Atrium	heart
26	chr20:11198400-11200800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr20:11198400-11201400	Weak transcription	Ovary	ovary
28	chr20:11198400-11202800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr20:11198400-11209200	Weak transcription	Aorta	Aorta
30	chr20:11198600-11199600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr20:11198600-11199600	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr20:11198600-11199800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr20:11198800-11199400	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr20:11199000-11199800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr20:11199000-11199800	Enhancers	Gastric	stomach
36	chr20:11199000-11201400	Enhancers	GM12878-XiMat	blood
37	chr20:11199200-11199400	Enhancers	NHLF	lung
38	chr20:11199200-11199800	Enhancers	A549	lung

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