Variant report

Variant	rs6108959
Chromosome Location	chr20:11393937-11393938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1883967	1.00[AMR][1000 genomes]
rs1883969	1.00[AMR][1000 genomes]
rs2207120	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56269268	1.00[AMR][1000 genomes]
rs6104736	1.00[AMR][1000 genomes]
rs6108912	1.00[AMR][1000 genomes]
rs6108926	1.00[AMR][1000 genomes]
rs6108928	1.00[AMR][1000 genomes]
rs6108938	1.00[AMR][1000 genomes]
rs6108939	1.00[AMR][1000 genomes]
rs6108957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7361118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73896361	1.00[AMR][1000 genomes]
rs73896365	1.00[AMR][1000 genomes]
rs73896366	1.00[AMR][1000 genomes]
rs73896383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432099	chr20:11371093-11476900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1061567	chr20:11379484-11405302	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
5	nsv1058734	chr20:11389232-11479953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11380000-11394200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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