Variant report

Variant	rs61091932
Chromosome Location	chr19:38856491-38856492
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:38855795..38857847-chr19:38858914..38861126,2	MCF-7	breast:
2	chr19:38856161..38860758-chr19:38862058..38866841,9	MCF-7	breast:
3	chr19:38852371..38854789-chr19:38855847..38858452,2	MCF-7	breast:
4	chr19:38847354..38850144-chr19:38856226..38859199,2	K562	blood:

Variant related genes	Relation type
ENSG00000099338	Chromatin interaction
ENSG00000099341	Chromatin interaction
ENSG00000266963	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11666449	0.93[EUR][1000 genomes]
rs11668651	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11669131	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11669230	0.89[EUR][1000 genomes]
rs11671779	0.81[AMR][1000 genomes]
rs11672219	0.89[EUR][1000 genomes]
rs11672793	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11673203	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2286473	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2302182	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2302183	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2304177	0.89[EUR][1000 genomes]
rs2368484	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2887262	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34989303	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35308902	0.89[EUR][1000 genomes]
rs4801723	0.87[EUR][1000 genomes]
rs4802326	0.89[EUR][1000 genomes]
rs4802327	0.89[EUR][1000 genomes]
rs4802351	0.97[ASN][1000 genomes]
rs4804016	0.92[EUR][1000 genomes]
rs4804046	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs57681346	0.88[EUR][1000 genomes]
rs60082376	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60487067	0.89[EUR][1000 genomes]
rs7256575	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8101488	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063471	chr19:38734744-39148392	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
2	nsv833822	chr19:38760748-38945105	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv911658	chr19:38785318-39002140	Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv470140	chr19:38840139-39119494	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv911659	chr19:38852357-39002140	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
6	nsv911660	chr19:38852357-39060238	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
7	nsv833823	chr19:38855550-39035800	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs61091932	C19orf33	cis	Heart Left Ventricle	GTEx
rs61091932	YIF1B	cis	Whole Blood	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38853800-38864400	Weak transcription	A549	lung

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