Variant report

Variant rs6109658
Chromosome Location chr20:13010543-13010544
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:13003400-13015400 Weak transcription Duodenum Mucosa Duodenum
2 chr20:13003800-13014600 Weak transcription Esophagus oesophagus
3 chr20:13003800-13026400 Weak transcription Aorta Aorta
4 chr20:13003800-13049600 Weak transcription Lung lung
5 chr20:13004000-13013000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr20:13004000-13027200 Weak transcription Pancreas Pancrea
7 chr20:13004000-13029200 Weak transcription Ovary ovary
8 chr20:13005000-13010600 Weak transcription Stomach Smooth Muscle stomach
9 chr20:13005400-13012800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr20:13005800-13010600 Enhancers HMEC breast
11 chr20:13006600-13014000 Weak transcription Brain Cingulate Gyrus brain
12 chr20:13007400-13011800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr20:13007400-13012000 Enhancers HSMM muscle
14 chr20:13007600-13011600 Enhancers HSMMtube muscle
15 chr20:13007800-13012400 Enhancers Placenta Amnion Placenta Amnion
16 chr20:13007800-13014200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr20:13007800-13016200 Weak transcription Left Ventricle heart
18 chr20:13008000-13011800 Enhancers Muscle Satellite Cultured Cells --
19 chr20:13008200-13011000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr20:13008400-13013000 Weak transcription Liver Liver
21 chr20:13008400-13014600 Genic enhancers Placenta Placenta
22 chr20:13008600-13011000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr20:13008600-13011400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr20:13008600-13011400 Enhancers NHLF lung
25 chr20:13008600-13011600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr20:13008600-13011600 Enhancers Breast Myoepithelial Primary Cells Breast
27 chr20:13008600-13011600 Enhancers NH-A brain
28 chr20:13009200-13011600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
29 chr20:13009400-13010800 Enhancers Adipose Nuclei Adipose
30 chr20:13009400-13011000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
31 chr20:13009400-13011400 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
32 chr20:13009400-13011400 Enhancers HUVEC blood vessel
33 chr20:13009400-13011600 Enhancers NHDF-Ad bronchial
34 chr20:13009400-13012000 Enhancers ES-I3 Cell Line embryonic stem cell
35 chr20:13009600-13011400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
36 chr20:13009600-13011400 Enhancers HUES64 Cell Line embryonic stem cell
37 chr20:13009600-13011400 Enhancers Stomach Mucosa stomach
38 chr20:13009600-13015800 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr20:13010000-13010600 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr20:13010000-13011600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr20:13010200-13011200 Enhancers Fetal Intestine Small intestine
42 chr20:13010400-13010600 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr20:13010400-13010800 Enhancers iPS-15b Cell Line embryonic stem cell
44 chr20:13010400-13010800 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
45 chr20:13010400-13010800 Flanking Active TSS Hela-S3 cervix
46 chr20:13010400-13010800 Flanking Active TSS NHEK skin
47 chr20:13010400-13011000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr20:13010400-13011000 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
49 chr20:13010400-13011000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
50 chr20:13010400-13011000 Enhancers Sigmoid Colon Sigmoid Colon

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