Variant report

Variant	rs6109837
Chromosome Location	chr20:1388891-1388892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:1388186..1390453-chr20:1399929..1402694,2	K562	blood:
2	chr20:1387186..1389098-chr20:1391471..1393677,2	MCF-7	breast:
3	chr20:1374791..1377395-chr20:1388884..1390483,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11696447	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1474879	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1474880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16994239	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1884390	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2064645	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2064646	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2873522	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41308086	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58194712	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58718584	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59239479	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6105101	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6105140	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6109838	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6109962	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6109984	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6109986	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6109989	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6109992	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66497853	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8124855	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs959813	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522008	chr20:1340390-1638578	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv432095	chr20:1382500-1420340	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv994443	chr20:1385239-1392933	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv585206	chr20:1386473-1714362	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	esv1819763	chr20:1386940-1390683	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv1834375	chr20:1386940-1390683	Enhancers Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv1817885	chr20:1386940-1400227	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3453894	chr20:1387152-1392750	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	esv1815191	chr20:1387658-1390682	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	esv1819996	chr20:1387658-1390682	Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	esv1835632	chr20:1387658-1390682	Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	esv1841302	chr20:1387658-1390682	Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	esv1847243	chr20:1387658-1390682	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	esv1849807	chr20:1387658-1390682	Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	esv3497599	chr20:1387952-1391950	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv585207	chr20:1388312-1390683	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	esv3453893	chr20:1388377-1392125	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	esv3497597	chr20:1388427-1391875	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	esv1816267	chr20:1388576-1390682	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	esv1821525	chr20:1388576-1390682	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	esv1836898	chr20:1388576-1390682	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	esv1840112	chr20:1388576-1390682	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	esv1851509	chr20:1388576-1390682	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
24	nsv511624	chr20:1388576-1391436	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
25	nsv820225	chr20:1388884-1393659	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
26	esv5984	chr20:1388890-1391032	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:1383800-1396000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr20:1384400-1395600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:1384400-1396000	Weak transcription	HMEC	breast
4	chr20:1388400-1389000	Strong transcription	Skeletal Muscle Female	skeletal muscle
5	chr20:1388400-1389200	Enhancers	Placenta	Placenta

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