Variant report

Variant	rs61099489
Chromosome Location	chr2:205804872-205804873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs58347501	1.00[AMR][1000 genomes]
rs59614427	1.00[AMR][1000 genomes]
rs73053164	1.00[AMR][1000 genomes]
rs73054913	1.00[AMR][1000 genomes]
rs73060925	1.00[AMR][1000 genomes]
rs73060932	1.00[AMR][1000 genomes]
rs73066608	1.00[AMR][1000 genomes]
rs73066610	1.00[AMR][1000 genomes]
rs73066621	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73066640	1.00[AMR][1000 genomes]
rs73066645	1.00[AMR][1000 genomes]
rs73066648	1.00[AMR][1000 genomes]
rs73066658	1.00[AMR][1000 genomes]
rs73066661	1.00[AMR][1000 genomes]
rs73066670	1.00[AMR][1000 genomes]
rs73066676	1.00[AMR][1000 genomes]
rs73066678	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2757846	chr2:205539832-205841174	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759111	chr2:205539832-205841174	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205804200-205805000	Enhancers	Colon Smooth Muscle	Colon
2	chr2:205804400-205809400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr2:205804800-205805200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:205804800-205805600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:205804800-205805600	Enhancers	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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