Variant report

Variant	rs61099958
Chromosome Location	chr9:94457774-94457775
allele	-/AT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv982647	chr9:94456202-94474602	Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv521046	chr9:94456714-94476418	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94444200-94461400	Weak transcription	Right Atrium	heart
2	chr9:94453400-94463600	Weak transcription	Fetal Stomach	stomach
3	chr9:94454000-94468200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr9:94456400-94457800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:94456600-94460000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:94456600-94460400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:94456600-94462400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:94456800-94458200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr9:94456800-94459400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr9:94457600-94457800	Bivalent Enhancer	Brain Substantia Nigra	brain
11	chr9:94457600-94458000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:94457600-94458000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:94457600-94458000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:94457600-94458000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
15	chr9:94457600-94458000	Genic enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr9:94457600-94458000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr9:94457600-94458000	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
18	chr9:94457600-94458000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr9:94457600-94458000	Enhancers	Esophagus	oesophagus
20	chr9:94457600-94458000	ZNF genes & repeats	Fetal Kidney	kidney
21	chr9:94457600-94458000	Active TSS	Fetal Lung	lung
22	chr9:94457600-94458000	Enhancers	Gastric	stomach
23	chr9:94457600-94458000	Enhancers	Lung	lung
24	chr9:94457600-94458000	ZNF genes & repeats	Pancreas	Pancrea
25	chr9:94457600-94458000	Flanking Active TSS	Spleen	Spleen
26	chr9:94457600-94458000	Active TSS	Hela-S3	cervix
27	chr9:94457600-94458000	ZNF genes & repeats	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links