Variant report

Variant	rs61101778
Chromosome Location	chr11:68126524-68126525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:68123132..68127007-chr11:68145812..68149123,3	MCF-7	breast:
2	chr11:68124164..68126816-chr11:68131354..68133171,2	K562	blood:
3	chr11:68125238..68127022-chr11:68141458..68143757,2	K562	blood:
4	chr11:68125237..68127996-chr11:68134543..68137773,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11574424	0.99[AFR][1000 genomes]
rs17149027	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17149031	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17149041	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17149042	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17159533	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2089915	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58373012	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58500312	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58779840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59682172	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60632461	1.00[EUR][1000 genomes]
rs61132569	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61539720	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7101866	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102311	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7111735	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7112824	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122741	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73515038	1.00[EUR][1000 genomes]
rs73515041	1.00[EUR][1000 genomes]
rs7939653	1.00[EUR][1000 genomes]
rs7939672	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7940269	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7947068	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
2	esv3347272	chr11:67969427-68218997	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv897857	chr11:68056770-68231240	Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv897858	chr11:68077238-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv897859	chr11:68102000-68231240	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv897860	chr11:68102000-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv1047532	chr11:68103330-68239242	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv541082	chr11:68103330-68239242	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv1039671	chr11:68120571-68206630	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1036561	chr11:68123135-68315685	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68110600-68137800	Weak transcription	Brain Angular Gyrus	brain
2	chr11:68111200-68137400	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:68114000-68129600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:68114800-68138000	Weak transcription	Fetal Kidney	kidney
5	chr11:68115400-68135200	Strong transcription	HepG2	liver
6	chr11:68121600-68131200	Strong transcription	Fetal Intestine Large	intestine
7	chr11:68121600-68148200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:68121800-68128200	Strong transcription	Dnd41	blood
9	chr11:68121800-68137400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:68121800-68156400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:68122000-68137800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:68122200-68139800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:68122400-68128200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:68122600-68138200	Weak transcription	HUVEC	blood vessel
15	chr11:68122800-68126600	Weak transcription	NHDF-Ad	bronchial
16	chr11:68122800-68129400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:68122800-68137200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr11:68123200-68132400	Weak transcription	Stomach Mucosa	stomach
19	chr11:68123200-68136800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:68123200-68137000	Weak transcription	Psoas Muscle	Psoas
21	chr11:68123200-68137200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:68123200-68139600	Weak transcription	Brain Substantia Nigra	brain
23	chr11:68123400-68132400	Strong transcription	Fetal Muscle Trunk	muscle
24	chr11:68123400-68136000	Strong transcription	Fetal Muscle Leg	muscle
25	chr11:68123800-68128000	Strong transcription	Fetal Lung	lung
26	chr11:68124000-68127000	Strong transcription	K562	blood
27	chr11:68124000-68129800	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr11:68124000-68137400	Strong transcription	Duodenum Mucosa	Duodenum
29	chr11:68124800-68126600	Strong transcription	NHEK	skin
30	chr11:68124800-68128200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:68124800-68146600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr11:68125000-68126600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:68125000-68126800	Strong transcription	Small Intestine	intestine
34	chr11:68125000-68127000	Strong transcription	H9 Cell Line	embryonic stem cell
35	chr11:68125000-68127000	Strong transcription	HSMMtube	muscle
36	chr11:68125000-68127000	Strong transcription	Osteobl	bone
37	chr11:68125000-68127600	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr11:68125000-68127800	Strong transcription	Fetal Thymus	thymus
39	chr11:68125000-68127800	Strong transcription	Thymus	Thymus
40	chr11:68125000-68128200	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr11:68125000-68128200	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr11:68125000-68128200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr11:68125000-68128200	Strong transcription	Colonic Mucosa	Colon
44	chr11:68125000-68128200	Strong transcription	Lung	lung
45	chr11:68125000-68128400	Strong transcription	Fetal Brain Female	brain
46	chr11:68125000-68128400	Strong transcription	Gastric	stomach
47	chr11:68125000-68128400	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr11:68125000-68129600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
49	chr11:68125200-68126600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr11:68125200-68127000	Strong transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links