Variant report

Variant	rs6110195
Chromosome Location	chr20:14179685-14179686
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs6105239	1.00[AMR][1000 genomes]
rs6110205	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6110227	1.00[AMR][1000 genomes]
rs6110229	1.00[AMR][1000 genomes]
rs6110233	1.00[AMR][1000 genomes]
rs6110234	1.00[AMR][1000 genomes]
rs6110236	1.00[AMR][1000 genomes]
rs6110245	1.00[AMR][1000 genomes]
rs73266939	1.00[AMR][1000 genomes]
rs73266940	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv531479	chr20:13632491-14434432	Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1057486	chr20:14077828-14469129	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv532514	chr20:14097780-14288315	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1066235	chr20:14173771-14389050	Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:14176800-14184400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:14178600-14180200	Enhancers	Fetal Intestine Large	intestine
3	chr20:14179000-14179800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr20:14179200-14179800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr20:14179200-14180000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr20:14179200-14180200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr20:14179400-14180000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr20:14179600-14179800	Enhancers	Fetal Heart	heart
9	chr20:14179600-14180000	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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