Variant report

Variant	rs6110210
Chromosome Location	chr20:1476134-1476135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs6033876	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6033904	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6042566	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6042668	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6042694	0.88[EUR][1000 genomes]
rs6105249	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6110218	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6110254	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73567340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522008	chr20:1340390-1638578	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv585206	chr20:1386473-1714362	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv833893	chr20:1414615-1527779	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:1471600-1478400	Weak transcription	NHEK	skin
2	chr20:1471600-1478800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr20:1472600-1476200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr20:1473000-1479000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr20:1474000-1479800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr20:1475400-1480800	Weak transcription	Fetal Thymus	thymus
7	chr20:1475600-1476600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr20:1475600-1480800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr20:1476000-1476200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr20:1476000-1480800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr20:1476000-1480800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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