Variant report
| Variant | rs61102923 |
|---|---|
| Chromosome Location | chr22:32755265-32755266 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 22:32529813-32538538..22:32750950-32761732 | K562 | blood: | |
| 2 | 22:32360288-32405313..22:32750950-32761732 | K562 | blood: | |
| 3 | 22:32665993-32670527..22:32750950-32761732 | K562 | blood: | |
| 4 | 22:31936958-31958600..22:32750950-32761732 | Hela-S3 | cervix: | |
| 5 | 22:32513817-32522138..22:32750950-32761732 | H1-hESC | embryonic stem cell: | embryo |
| 6 | 22:32750950-32761732..22:33253287-33262063 | Hela-S3 | cervix: | |
| 7 | 22:32284948-32287956..22:32750950-32761732 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000214093 | Chromatin interaction |
| ENSG00000227813 | Chromatin interaction |
| ENSG00000183531 | Chromatin interaction |
| ENSG00000232707 | Chromatin interaction |
| ENSG00000234479 | Chromatin interaction |
| ENSG00000239674 | Chromatin interaction |
| ENSG00000230866 | Chromatin interaction |
| ENSG00000224050 | Chromatin interaction |
| ENSG00000240647 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs16990340 | 1.00[EUR][1000 genomes] |
| rs16990363 | 1.00[EUR][1000 genomes] |
| rs41520848 | 1.00[EUR][1000 genomes] |
| rs55696448 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56005103 | 1.00[AMR][1000 genomes] |
| rs56092159 | 1.00[AMR][1000 genomes] |
| rs56965504 | 1.00[AMR][1000 genomes] |
| rs57377298 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58406751 | 1.00[AMR][1000 genomes] |
| rs58967861 | 1.00[AMR][1000 genomes] |
| rs5998365 | 1.00[EUR][1000 genomes] |
| rs5998441 | 1.00[EUR][1000 genomes] |
| rs73395092 | 1.00[EUR][1000 genomes] |
| rs73881640 | 1.00[EUR][1000 genomes] |
| rs73881645 | 1.00[EUR][1000 genomes] |
| rs73881667 | 1.00[AMR][1000 genomes] |
| rs8140227 | 1.00[EUR][1000 genomes] |
| rs8140647 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948789 | chr22:32462505-32764760 | Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 2 | nsv1065175 | chr22:32467617-32761093 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 3 | nsv544680 | chr22:32467617-32761093 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 4 | esv2830423 | chr22:32477718-32767825 | Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 5 | esv2422247 | chr22:32486448-32788258 | Strong transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 44 gene(s) | inside rSNPs | diseases |
| 6 | nsv459874 | chr22:32574274-32866934 | Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| 7 | nsv588895 | chr22:32574274-32866934 | Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| 8 | nsv1064737 | chr22:32603912-32829725 | Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 38 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr22:32750800-32755600 | Weak transcription | Ovary | ovary |
