Variant report
| Variant | rs61103903 |
|---|---|
| Chromosome Location | chr1:47922066-47922067 |
| allele | -/AC/ACAC |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:47921416..47925301-chr1:47925972..47930425,4 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs12070024 | 0.81[AMR][1000 genomes] |
| rs12090153 | 0.82[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1316443 | 0.86[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1680018 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1680020 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2622909 | 0.83[AMR][1000 genomes] |
| rs2622917 | 0.83[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2622920 | 0.82[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2622921 | 0.82[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2820970 | 0.82[ASN][1000 genomes] |
| rs2820971 | 0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2820974 | 0.82[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs3738315 | 0.87[ASN][1000 genomes] |
| rs505399 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs524158 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs527551 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs538286 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs557851 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs571281 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7526434 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7552140 | 0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9436899 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1001779 | chr1:47884229-48111485 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv871299 | chr1:47889417-48057890 | Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | esv2755190 | chr1:47907580-48048680 | Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:47918000-47924800 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr1:47921000-47925200 | Weak transcription | Right Atrium | heart |
