The 2.0 version of rSNPBase

Variant report

Variant rs6111102
Chromosome Location chr20:16393272-16393273
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16346600-16393600 Weak transcription Primary T regulatory cells fromperipheralblood blood
2 chr20:16372600-16404600 Weak transcription Primary T helper naive cells fromperipheralblood blood
3 chr20:16375400-16396400 Weak transcription Stomach Mucosa stomach
4 chr20:16378000-16404400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
5 chr20:16378800-16393400 Strong transcription Rectal Mucosa Donor 29 rectum
6 chr20:16379200-16395800 Weak transcription NHDF-Ad bronchial
7 chr20:16381400-16399200 Weak transcription HMEC breast
8 chr20:16384000-16432600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
9 chr20:16385200-16404200 Weak transcription Primary T cells fromperipheralblood blood
10 chr20:16385400-16404200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
11 chr20:16386200-16404400 Weak transcription Rectal Smooth Muscle rectum
12 chr20:16386400-16398600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
13 chr20:16386400-16404200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr20:16387000-16399000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr20:16387000-16399000 Weak transcription Liver Liver
16 chr20:16387000-16399000 Weak transcription Pancreas Pancrea
17 chr20:16387000-16399400 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr20:16387000-16403000 Weak transcription Fetal Stomach stomach
19 chr20:16387000-16404200 Weak transcription Gastric stomach
20 chr20:16387000-16406400 Weak transcription Primary T helper cells PMA-I stimulated --
21 chr20:16387200-16399600 Weak transcription NHEK skin
22 chr20:16387400-16404000 Weak transcription Primary T helper cells fromperipheralblood blood
23 chr20:16387400-16404400 Weak transcription Esophagus oesophagus
24 chr20:16387400-16411800 Weak transcription Colonic Mucosa Colon
25 chr20:16388800-16399000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr20:16389400-16396200 Weak transcription HepG2 liver
27 chr20:16389600-16404200 Weak transcription A549 lung
28 chr20:16391000-16401800 Weak transcription HUES64 Cell Line embryonic stem cell
29 chr20:16391200-16393800 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
30 chr20:16391200-16394000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr20:16391600-16406400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr20:16391600-16410800 Weak transcription Thymus Thymus
33 chr20:16391800-16399200 Weak transcription Ovary ovary
34 chr20:16391800-16399400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr20:16391800-16404200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
36 chr20:16391800-16404400 Weak transcription Monocytes-CD14+_RO01746 blood
37 chr20:16391800-16409800 Weak transcription Brain Angular Gyrus brain
38 chr20:16391800-16414600 Weak transcription Colon Smooth Muscle Colon
39 chr20:16392000-16395400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr20:16392000-16398800 Weak transcription Primary B cells from cord blood blood
41 chr20:16392000-16404200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr20:16392000-16405600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr20:16392000-16406400 Weak transcription Brain Anterior Caudate brain
44 chr20:16392000-16407000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
45 chr20:16392200-16393400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr20:16392200-16393600 Weak transcription HSMM muscle
47 chr20:16392200-16395400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr20:16392200-16399200 Weak transcription Duodenum Mucosa Duodenum
49 chr20:16392200-16404200 Weak transcription Skeletal Muscle Female skeletal muscle
50 chr20:16392200-16412800 Weak transcription Fetal Kidney kidney

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Last update: Aug 31, 2015