Variant report

Variant	rs61121089
Chromosome Location	chr22:27536556-27536557
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr22:27535961-27536668	A549	lung:	n/a	n/a
2	FOS	chr22:27536186-27536556	MCF10A-Er-Src	breast:	n/a	chr22:27536359-27536370
3	TCF12	chr22:27535845-27536637	A549	lung:	n/a	chr22:27535887-27535895 chr22:27536123-27536133
4	GATA3	chr22:27535913-27536752	A549	lung:	n/a	n/a
5	CEBPB	chr22:27536090-27536623	A549	lung:	n/a	n/a
6	FOSL2	chr22:27535969-27536589	A549	lung:	n/a	chr22:27535998-27536009
7	FOS	chr22:27536043-27536567	HUVEC	blood vessel:	n/a	chr22:27536359-27536370
8	FOS	chr22:27536174-27536556	MCF10A-Er-Src	breast:	n/a	chr22:27536359-27536370
9	SP1	chr22:27535937-27536632	A549	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000231405	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs59614553	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917333	chr22:26931825-27692024	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	142 gene(s)	inside rSNPs	diseases
2	esv34168	chr22:27289097-27678031	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3413125	chr22:27404463-28121577	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv459860	chr22:27527005-28181436	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv588872	chr22:27527005-28181436	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:27533600-27537400	Enhancers	Brain Germinal Matrix	brain
2	chr22:27534400-27537000	Weak transcription	Fetal Brain Female	brain
3	chr22:27534600-27537200	Enhancers	NH-A	brain
4	chr22:27535200-27536800	Enhancers	HUVEC	blood vessel
5	chr22:27535200-27537200	Enhancers	Osteobl	bone
6	chr22:27535400-27536800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr22:27535600-27536600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr22:27535600-27536800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr22:27535600-27538600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr22:27535800-27536600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr22:27535800-27536600	Enhancers	Colon Smooth Muscle	Colon
12	chr22:27535800-27536600	Enhancers	NHLF	lung
13	chr22:27535800-27536800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr22:27535800-27537000	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr22:27536000-27536600	Enhancers	Placenta Amnion	Placenta Amnion
16	chr22:27536000-27536600	Enhancers	HSMMtube	muscle
17	chr22:27536000-27537000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr22:27536000-27537000	Bivalent Enhancer	NHDF-Ad	bronchial
19	chr22:27536200-27536600	Weak transcription	Aorta	Aorta
20	chr22:27536200-27536600	Enhancers	Fetal Brain Male	brain
21	chr22:27536200-27537600	Enhancers	A549	lung
22	chr22:27536400-27536600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr22:27536400-27536800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr22:27536400-27538400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr22:27536400-27546000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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