Variant report

Variant	rs61131320
Chromosome Location	chr8:6424550-6424551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:6423765-6424947	MCF-7	breast:	n/a	n/a
2	TCF3	chr8:6424197-6424845	GM12878	blood:	n/a	n/a
3	POLR2A	chr8:6424515-6424580	Gliobla	brain:	n/a	n/a
4	POLR2A	chr8:6424542-6424786	A549	lung:	n/a	n/a
5	POLR2A	chr8:6423804-6424956	MCF-7	breast:	n/a	n/a
6	MYC	chr8:6423814-6424927	MCF-7	breast:	n/a	chr8:6423843-6423850
7	REST	chr8:6424472-6424614	PANC-1	pancreas:	n/a	n/a
8	NR2C2	chr8:6423914-6424901	GM12878	blood:	n/a	n/a
9	MYC	chr8:6424173-6424846	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
ANGPT2	TF binding region

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10103026	0.90[ASN][1000 genomes]
rs10108504	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10112266	0.84[EUR][1000 genomes]
rs11997149	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1562714	0.92[ASN][1000 genomes]
rs1562715	0.92[ASN][1000 genomes]
rs2167072	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442509	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2442591	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2515507	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2515508	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2515509	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2515513	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28539969	0.90[ASN][1000 genomes]
rs2922808	0.95[ASN][1000 genomes]
rs2922816	0.92[ASN][1000 genomes]
rs2922864	0.80[ASN][1000 genomes]
rs2922884	0.90[ASN][1000 genomes]
rs2922890	0.90[ASN][1000 genomes]
rs2922893	0.92[ASN][1000 genomes]
rs2922894	0.92[ASN][1000 genomes]
rs2959763	0.85[ASN][1000 genomes]
rs2959764	0.90[ASN][1000 genomes]
rs2959765	0.90[ASN][1000 genomes]
rs2959767	0.92[ASN][1000 genomes]
rs2959768	0.92[ASN][1000 genomes]
rs2959769	0.92[ASN][1000 genomes]
rs3020227	0.85[ASN][1000 genomes]
rs3020230	0.90[ASN][1000 genomes]
rs3020231	0.90[ASN][1000 genomes]
rs3020232	0.90[ASN][1000 genomes]
rs3020233	0.90[ASN][1000 genomes]
rs3020234	0.90[ASN][1000 genomes]
rs3020235	0.95[ASN][1000 genomes]
rs3020236	0.95[ASN][1000 genomes]
rs34792601	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55959962	0.95[EUR][1000 genomes]
rs56954299	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6991221	0.90[ASN][1000 genomes]
rs7004238	0.90[ASN][1000 genomes]
rs73507187	0.92[ASN][1000 genomes]
rs73507189	0.92[ASN][1000 genomes]
rs9314604	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890034	chr8:5926632-6427868	Enhancers Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1021175	chr8:5965453-6880364	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1027682	chr8:6018123-6920312	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	esv3506199	chr8:6116693-6536592	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
5	esv3506200	chr8:6116693-6536592	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	nsv933282	chr8:6261036-6440592	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1015981	chr8:6286575-6578450	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
8	nsv1027313	chr8:6286575-6920312	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
9	nsv890057	chr8:6317165-6427868	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1021684	chr8:6350091-6809455	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
11	esv2422383	chr8:6362389-6781593	Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
12	nsv610004	chr8:6402366-6772913	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
13	nsv1029241	chr8:6411300-6761720	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
14	esv3421336	chr8:6421944-6427042	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	esv3364328	chr8:6423194-6425692	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:6364200-6478200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr8:6416800-6442400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:6417600-6442800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:6419000-6462400	Weak transcription	GM12878-XiMat	blood
5	chr8:6420000-6427400	Weak transcription	Thymus	Thymus
6	chr8:6420800-6427600	Weak transcription	NHDF-Ad	bronchial
7	chr8:6420800-6429800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:6420800-6433200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:6421000-6424600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:6421000-6424800	Weak transcription	Fetal Thymus	thymus
11	chr8:6421000-6425200	Weak transcription	Fetal Muscle Leg	muscle
12	chr8:6421000-6425400	Weak transcription	Fetal Stomach	stomach
13	chr8:6421000-6425800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr8:6421000-6426000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr8:6421000-6427400	Weak transcription	Left Ventricle	heart
16	chr8:6421000-6427400	Weak transcription	Ovary	ovary
17	chr8:6421000-6427800	Weak transcription	Aorta	Aorta
18	chr8:6421000-6427800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr8:6421000-6435400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr8:6421200-6424800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:6421200-6425200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr8:6421200-6425600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr8:6421200-6436200	Weak transcription	Right Atrium	heart
24	chr8:6421400-6427400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr8:6421400-6433200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr8:6421600-6426800	Weak transcription	HUVEC	blood vessel
27	chr8:6421600-6462800	Weak transcription	Primary B cells from cord blood	blood
28	chr8:6421800-6427400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr8:6422000-6426800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:6422200-6424800	Weak transcription	Primary B cells from peripheral blood	blood
31	chr8:6423400-6424800	Strong transcription	Primary T cells from cord blood	blood
32	chr8:6423600-6424800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr8:6423800-6424600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr8:6423800-6424600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr8:6423800-6424800	ZNF genes & repeats	Spleen	Spleen
36	chr8:6423800-6425000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr8:6423800-6425000	ZNF genes & repeats	Pancreas	Pancrea
38	chr8:6423800-6425000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
39	chr8:6423800-6425000	Genic enhancers	Dnd41	blood
40	chr8:6424000-6424600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
41	chr8:6424000-6424600	ZNF genes & repeats	Gastric	stomach
42	chr8:6424000-6424800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr8:6424200-6424800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr8:6424200-6442600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr8:6424400-6424800	ZNF genes & repeats	Esophagus	oesophagus
46	chr8:6424400-6426000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr8:6424400-6427000	Weak transcription	Adipose Nuclei	Adipose
48	chr8:6424400-6427000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr8:6424400-6434400	Weak transcription	Lung	lung
50	chr8:6424400-6442800	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links