Variant report

Variant	rs61137308
Chromosome Location	chr8:39946810-39946811
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1383602	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1904906	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1904907	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55977637	0.84[AFR][1000 genomes]
rs56275210	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56347116	0.84[AFR][1000 genomes]
rs56409441	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58305906	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58536333	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59124739	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59130673	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60215074	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6987482	0.84[AFR][1000 genomes]
rs7000302	0.84[AFR][1000 genomes]
rs73617867	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73617895	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73617897	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73619620	0.95[AMR][1000 genomes]
rs7827931	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7829020	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7829771	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv534582	chr8:39884590-40653224	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1034355	chr8:39942179-39961432	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39940000-39950000	Weak transcription	A549	lung
2	chr8:39944000-39950800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:39944200-39949800	Weak transcription	Colon Smooth Muscle	Colon
4	chr8:39944600-39948200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:39944600-39948200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:39944600-39950200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr8:39945200-39948200	Weak transcription	HepG2	liver
8	chr8:39946600-39948200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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