Variant report

Variant	rs61137585
Chromosome Location	chr9:15745479-15745480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56757670	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57149079	1.00[AMR][1000 genomes]
rs57232765	1.00[AMR][1000 genomes]
rs57733700	1.00[AMR][1000 genomes]
rs58171560	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58301911	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58920138	1.00[AMR][1000 genomes]
rs59765656	1.00[AMR][1000 genomes]
rs60303840	1.00[AMR][1000 genomes]
rs61064954	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61312344	1.00[AMR][1000 genomes]
rs61341831	1.00[AMR][1000 genomes]
rs61478887	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892634	chr9:15696501-15746168	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15679800-15746800	Weak transcription	Ovary	ovary
2	chr9:15687600-15746600	Weak transcription	Aorta	Aorta
3	chr9:15715200-15746200	Weak transcription	Left Ventricle	heart
4	chr9:15718000-15749600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr9:15718600-15746600	Weak transcription	Thymus	Thymus
6	chr9:15729000-15746800	Weak transcription	Fetal Thymus	thymus
7	chr9:15737000-15754000	Weak transcription	Gastric	stomach
8	chr9:15738200-15746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:15739200-15746800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:15741200-15746600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr9:15741400-15746200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr9:15742600-15746600	Weak transcription	Pancreas	Pancrea
13	chr9:15742600-15746800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:15742600-15769600	Weak transcription	Psoas Muscle	Psoas
15	chr9:15744200-15745600	Active TSS	Fetal Brain Female	brain
16	chr9:15744200-15746600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:15744600-15747600	Weak transcription	Small Intestine	intestine
18	chr9:15745000-15746000	Weak transcription	Fetal Brain Male	brain
19	chr9:15745000-15746600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr9:15745000-15749600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr9:15745200-15746800	Weak transcription	Brain Hippocampus Middle	brain
22	chr9:15745200-15748400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links