Variant report

Variant	rs6113897
Chromosome Location	chr20:23000009-23000010
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22672061..22672657-chr20:22999767..23000390,2	MCF-7	breast:
2	chr20:22997980..23000711-chr20:23001339..23003564,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs220990	0.85[CEU][hapmap];0.82[CHB][hapmap];0.84[AMR][1000 genomes]
rs2235951	0.81[AMR][1000 genomes]
rs2235952	0.81[AMR][1000 genomes]
rs2567608	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs2567609	0.85[CEU][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes]
rs2567613	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2567614	0.80[AMR][1000 genomes]
rs6076004	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6082979	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6082981	0.85[CHB][hapmap]
rs6113909	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22991200-23002200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr20:22996000-23006200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr20:22998000-23000800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr20:22998400-23000200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr20:22998400-23001200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr20:22998600-23001000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr20:22998800-23000200	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr20:22998800-23000800	Enhancers	Brain Germinal Matrix	brain
9	chr20:22998800-23001800	Weak transcription	Thymus	Thymus
10	chr20:22999000-23001000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr20:22999400-23000400	Enhancers	Brain Angular Gyrus	brain
12	chr20:22999600-23001000	Enhancers	Brain Cingulate Gyrus	brain
13	chr20:22999600-23001000	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr20:22999600-23001000	Enhancers	Brain Substantia Nigra	brain
15	chr20:22999800-23000400	Enhancers	Dnd41	blood
16	chr20:22999800-23001000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr20:22999800-23001000	Enhancers	Brain Hippocampus Middle	brain
18	chr20:22999800-23001400	Enhancers	Fetal Muscle Leg	muscle
19	chr20:23000000-23000200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr20:23000000-23000200	Enhancers	Lung	lung
21	chr20:23000000-23000400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr20:23000000-23000400	Flanking Active TSS	Brain Anterior Caudate	brain
23	chr20:23000000-23000400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr20:23000000-23000600	Enhancers	Fetal Thymus	thymus

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