Variant report

Variant	rs6114197
Chromosome Location	chr20:23594454-23594455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23593307..23595143-chr20:23609634..23612477,2	K562	blood:
2	chr20:23593520..23595172-chr20:23617829..23619387,2	MCF-7	breast:
3	chr20:23587750..23589396-chr20:23593301..23594908,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101439	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6106684	1.00[AMR][1000 genomes]
rs6106688	1.00[YRI][hapmap]
rs6114195	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6114212	1.00[AMR][1000 genomes]
rs6114216	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv20263	chr20:23593820-23594562	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23587000-23595600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr20:23588200-23594800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr20:23590400-23595000	Weak transcription	Brain Anterior Caudate	brain
4	chr20:23592200-23595400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr20:23592400-23594800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr20:23592600-23595400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr20:23593000-23595200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr20:23593400-23595200	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr20:23593600-23595200	Enhancers	Ovary	ovary
10	chr20:23594000-23594800	Enhancers	Adipose Nuclei	Adipose
11	chr20:23594000-23595000	Enhancers	Brain Germinal Matrix	brain
12	chr20:23594000-23595200	Enhancers	Right Atrium	heart
13	chr20:23594000-23595400	Enhancers	Rectal Smooth Muscle	rectum
14	chr20:23594000-23595800	Enhancers	Colon Smooth Muscle	Colon
15	chr20:23594200-23594600	Weak transcription	Brain Hippocampus Middle	brain
16	chr20:23594200-23595200	Enhancers	Fetal Muscle Trunk	muscle
17	chr20:23594200-23595200	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr20:23594400-23595000	Enhancers	Fetal Stomach	stomach
19	chr20:23594400-23595200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr20:23594400-23595200	Enhancers	Fetal Muscle Leg	muscle
21	chr20:23594400-23595200	Enhancers	Left Ventricle	heart
22	chr20:23594400-23595200	Enhancers	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links