Variant report

Variant	rs6114454
Chromosome Location	chr20:24048180-24048181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1592133	1.00[EUR][1000 genomes]
rs28578736	1.00[EUR][1000 genomes]
rs56296104	1.00[EUR][1000 genomes]
rs58508170	1.00[EUR][1000 genomes]
rs59273058	1.00[EUR][1000 genomes]
rs7266557	1.00[EUR][1000 genomes]
rs73902532	1.00[EUR][1000 genomes]
rs73902537	1.00[EUR][1000 genomes]
rs73902565	1.00[EUR][1000 genomes]
rs73902566	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24047200-24048200	Enhancers	Primary hematopoietic stem cells	blood
2	chr20:24047200-24048200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr20:24047400-24048400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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