Variant report

Variant	rs61145527
Chromosome Location	chr1:209550052-209550053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:209547762..209552825-chr1:209601391..209605097,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230937	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs74155469	0.82[AFR][1000 genomes]
rs74155476	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209535800-209550800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:209544400-209550200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:209546600-209552800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:209546800-209550600	Enhancers	NHEK	skin
5	chr1:209547400-209556000	Weak transcription	Esophagus	oesophagus
6	chr1:209548000-209550200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:209548400-209550200	Enhancers	HMEC	breast
8	chr1:209548600-209550200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr1:209548600-209550200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:209548600-209550200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr1:209549000-209550600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:209549000-209552800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:209549400-209550200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr1:209549400-209551400	Weak transcription	Fetal Lung	lung
15	chr1:209549400-209551600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:209549400-209552400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr1:209549400-209552800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr1:209549400-209556200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr1:209549400-209556600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr1:209549600-209552800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr1:209549600-209557200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:209549800-209551800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr1:209549800-209552000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr1:209549800-209552400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr1:209549800-209553000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr1:209549800-209560400	Weak transcription	HSMM	muscle
27	chr1:209550000-209551800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr1:209550000-209552200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr1:209550000-209552600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr1:209550000-209552600	Weak transcription	Osteobl	bone
31	chr1:209550000-209555400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr1:209550000-209555400	Weak transcription	Fetal Brain Male	brain

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