Variant report

Variant	rs6114747
Chromosome Location	chr20:24490547-24490548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6049747	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24471200-24493600	Weak transcription	Fetal Brain Female	brain
2	chr20:24475600-24495600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr20:24481600-24504200	Weak transcription	Fetal Brain Male	brain
4	chr20:24484000-24493000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr20:24484600-24490600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr20:24488400-24492400	Weak transcription	Primary T cells from cord blood	blood
7	chr20:24488600-24498800	Weak transcription	Brain Hippocampus Middle	brain
8	chr20:24488800-24492200	Weak transcription	Fetal Thymus	thymus
9	chr20:24490400-24490600	Enhancers	Right Ventricle	heart
10	chr20:24490400-24492000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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