Variant report

Variant	rs61150767
Chromosome Location	chr7:86572855-86572856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr7:86572598-86573283	A549	lung:	n/a	chr7:86572686-86572697 chr7:86572684-86572701 chr7:86573084-86573095 chr7:86572685-86572698 chr7:86572955-86572966
2	CEBPB	chr7:86572541-86573360	HepG2	liver:	n/a	chr7:86572686-86572697 chr7:86572684-86572701 chr7:86573084-86573095 chr7:86572685-86572698 chr7:86572955-86572966
3	CEBPB	chr7:86572626-86573289	K562	blood:	n/a	chr7:86572686-86572697 chr7:86572684-86572701 chr7:86573084-86573095 chr7:86572685-86572698 chr7:86572955-86572966
4	CEBPB	chr7:86572808-86573266	IMR90	lung:	n/a	chr7:86573084-86573095 chr7:86572955-86572966
5	TCF7L2	chr7:86572093-86572991	HEK293	kidney:	n/a	chr7:86572098-86572112 chr7:86572672-86572682 chr7:86572200-86572214 chr7:86572203-86572212

No.	Distal block	Cell Line	Cell type
1	chr7:86566956..86570257-chr7:86571660..86574220,4	K562	blood:
2	chr7:86571334..86573842-chr7:86786920..86788865,2	K562	blood:
3	chr7:86567223..86569708-chr7:86571997..86573517,2	MCF-7	breast:
4	chr7:86571988..86574729-chr7:86782180..86784743,2	K562	blood:

Variant related genes	Relation type
KIAA1324L	TF binding region
ENSG00000135164	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73706810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73706816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73706828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv1015870	chr7:86490491-86802320	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
6	nsv539000	chr7:86490491-86802320	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
7	nsv527889	chr7:86496042-86832603	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86498400-86576200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:86518000-86577000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:86521000-86576400	Weak transcription	Hela-S3	cervix
4	chr7:86527000-86577000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:86527200-86575800	Weak transcription	Left Ventricle	heart
6	chr7:86539200-86578800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:86551000-86576200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:86555000-86577000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:86561800-86578600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:86563000-86578200	Weak transcription	HUVEC	blood vessel
11	chr7:86567600-86578600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:86567800-86576400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr7:86568200-86576200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr7:86568400-86576000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr7:86568800-86576400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:86569000-86574200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:86569000-86576800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:86569200-86581400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:86569400-86578600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:86570400-86573400	Enhancers	Brain Substantia Nigra	brain
21	chr7:86570600-86573600	Enhancers	Brain Angular Gyrus	brain
22	chr7:86571200-86577200	Weak transcription	Adipose Nuclei	Adipose
23	chr7:86571600-86573000	Enhancers	Brain Hippocampus Middle	brain
24	chr7:86571600-86573000	Enhancers	K562	blood
25	chr7:86571800-86576200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr7:86572000-86577200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:86572200-86578400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr7:86572400-86573000	Enhancers	Fetal Heart	heart
29	chr7:86572400-86573200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr7:86572400-86574200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr7:86572600-86574200	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr7:86572600-86577000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr7:86572600-86578800	Weak transcription	Brain Anterior Caudate	brain
34	chr7:86572800-86573200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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