Variant report

Variant	rs61150935
Chromosome Location	chr1:173375373-173375374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173370330..173371869-chr1:173373575..173375801,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10912571	1.00[EUR][1000 genomes]
rs56659867	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57092065	1.00[EUR][1000 genomes]
rs58541773	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126366	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173348600-173389400	Weak transcription	Right Ventricle	heart
2	chr1:173354000-173379800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:173354800-173376000	Weak transcription	Primary B cells from cord blood	blood
4	chr1:173355400-173379800	Weak transcription	Pancreas	Pancrea
5	chr1:173362600-173381200	Weak transcription	Ovary	ovary
6	chr1:173362800-173375800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:173362800-173379800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:173362800-173382600	Weak transcription	Fetal Heart	heart
9	chr1:173363000-173375800	Weak transcription	K562	blood
10	chr1:173363000-173379000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:173363800-173389400	Weak transcription	Fetal Lung	lung
12	chr1:173364000-173376000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr1:173365000-173385200	Weak transcription	Fetal Stomach	stomach
14	chr1:173365200-173382600	Weak transcription	Fetal Muscle Leg	muscle
15	chr1:173365600-173375800	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr1:173365600-173376000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr1:173367200-173375800	Weak transcription	Thymus	Thymus
18	chr1:173367800-173379600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr1:173369200-173376000	Weak transcription	Lung	lung
20	chr1:173370600-173378600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:173370800-173376000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr1:173370800-173379400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr1:173370800-173382600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr1:173370800-173389200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr1:173370800-173389200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr1:173370800-173389400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr1:173370800-173389400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr1:173370800-173389400	Weak transcription	Aorta	Aorta
29	chr1:173371400-173375800	Enhancers	GM12878-XiMat	blood
30	chr1:173371400-173378200	Weak transcription	Primary T cells from cord blood	blood
31	chr1:173372000-173375600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr1:173372000-173375800	Weak transcription	Psoas Muscle	Psoas
33	chr1:173372000-173398600	Weak transcription	Brain Substantia Nigra	brain
34	chr1:173372400-173375800	Weak transcription	Left Ventricle	heart
35	chr1:173372400-173376000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr1:173372600-173375800	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr1:173374000-173375800	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr1:173374200-173375400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr1:173374200-173375400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr1:173374200-173375400	Enhancers	HSMMtube	muscle
41	chr1:173374200-173376000	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr1:173374200-173376400	Enhancers	HMEC	breast
43	chr1:173374200-173376400	Enhancers	NHEK	skin
44	chr1:173374400-173375400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr1:173374400-173375400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr1:173374400-173375400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr1:173374400-173375400	Enhancers	NHDF-Ad	bronchial
48	chr1:173374400-173375400	Enhancers	NHLF	lung
49	chr1:173374400-173375600	Enhancers	Muscle Satellite Cultured Cells	--
50	chr1:173374400-173375800	Weak transcription	Right Atrium	heart

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