Variant report

Variant	rs61156406
Chromosome Location	chr3:95057203-95057204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:94709818..94710517-chr3:95057153..95057747,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1400295	1.00[ASN][1000 genomes]
rs1476324	1.00[ASN][1000 genomes]
rs1968015	1.00[ASN][1000 genomes]
rs477121	1.00[ASN][1000 genomes]
rs6790242	1.00[ASN][1000 genomes]
rs72920896	1.00[ASN][1000 genomes]
rs72922606	1.00[ASN][1000 genomes]
rs72922608	1.00[ASN][1000 genomes]
rs72922615	1.00[ASN][1000 genomes]
rs72922617	1.00[ASN][1000 genomes]
rs72922618	1.00[ASN][1000 genomes]
rs72922622	1.00[ASN][1000 genomes]
rs72922627	1.00[ASN][1000 genomes]
rs72922642	1.00[ASN][1000 genomes]
rs72922655	1.00[ASN][1000 genomes]
rs72922675	1.00[ASN][1000 genomes]
rs72922679	1.00[ASN][1000 genomes]
rs72924619	1.00[ASN][1000 genomes]
rs72924622	1.00[ASN][1000 genomes]
rs72924627	1.00[ASN][1000 genomes]
rs72924632	1.00[ASN][1000 genomes]
rs72924639	1.00[ASN][1000 genomes]
rs72924644	1.00[ASN][1000 genomes]
rs72924646	1.00[ASN][1000 genomes]
rs938532	1.00[ASN][1000 genomes]
rs9811780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9850743	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9851182	1.00[ASN][1000 genomes]
rs9854054	1.00[ASN][1000 genomes]
rs9858320	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9865304	1.00[ASN][1000 genomes]
rs9868957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013680	chr3:94777881-95538336	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536653	chr3:94777881-95538336	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv877170	chr3:94790666-95564838	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv999347	chr3:94832290-95177750	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv877175	chr3:94869561-95210873	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1011235	chr3:94870789-95238299	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv428091	chr3:94942642-95393754	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv428744	chr3:94960533-95145238	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv834767	chr3:94972069-95148035	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv834769	chr3:95040949-95202234	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:95046200-95062400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:95053800-95060600	Weak transcription	Fetal Kidney	kidney
3	chr3:95057000-95062000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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