Variant report

Variant	rs61160081
Chromosome Location	chr14:65443436-65443437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr14:65443414-65443790	HepG2	liver:	n/a	chr14:65443582-65443596 chr14:65443581-65443596 chr14:65443584-65443593
2	RFX5	chr14:65443353-65444156	IMR90	lung:	n/a	chr14:65443582-65443596 chr14:65443581-65443596 chr14:65443584-65443593

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65436160..65440593-chr14:65441926..65445213,3	MCF-7	breast:
2	chr14:65427868..65430496-chr14:65442543..65444279,2	MCF-7	breast:

Variant related genes	Relation type
RAB15	TF binding region
ENSG00000139998	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10132686	0.87[ASN][1000 genomes]
rs11623866	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7160073	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs61160081	CHURC1	cis	Esophagus Mucosa	GTEx
rs61160081	CHURC1	cis	Thyroid	GTEx
rs61160081	CHURC1	Cis_1M	lymphoblastoid	RTeQTL
rs61160081	CHURC1	cis	Whole Blood	GTEx
rs61160081	CHURC1	cis	Muscle Skeletal	GTEx
rs61160081	CHURC1	cis	Adipose Subcutaneous	GTEx
rs61160081	CHURC1	cis	lung	GTEx
rs61160081	CHURC1	cis	Artery Tibial	GTEx
rs61160081	CHURC1	cis	Nerve Tibial	GTEx
rs61160081	RAB15	Cis_1M	lymphoblastoid	RTeQTL
rs61160081	CHURC1	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65439600-65446200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:65439600-65453600	Weak transcription	Aorta	Aorta
3	chr14:65439800-65450200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr14:65439800-65450200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr14:65440000-65444800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:65440000-65445000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:65440000-65446200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:65440400-65443600	Weak transcription	A549	lung
9	chr14:65441400-65443600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr14:65441600-65443600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr14:65441600-65443600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr14:65441600-65443600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr14:65441600-65446200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:65441800-65445000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr14:65441800-65445000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr14:65441800-65446200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr14:65442000-65443600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr14:65442800-65444000	Enhancers	HepG2	liver
19	chr14:65443200-65444200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr14:65443400-65443600	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr14:65443400-65443800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr14:65443400-65444000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr14:65443400-65444000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr14:65443400-65444000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr14:65443400-65444400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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