Variant report

Variant	rs61163796
Chromosome Location	chr2:99280139-99280140
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72956620	1.00[AMR][1000 genomes]
rs7576990	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013941	chr2:99116255-99317933	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv535834	chr2:99116255-99317933	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv582516	chr2:99254031-99304794	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99231200-99286200	Weak transcription	Stomach Mucosa	stomach
2	chr2:99234600-99310600	Weak transcription	Small Intestine	intestine
3	chr2:99234800-99296400	Weak transcription	Esophagus	oesophagus
4	chr2:99249800-99318000	Weak transcription	Psoas Muscle	Psoas
5	chr2:99251400-99295600	Weak transcription	Fetal Stomach	stomach
6	chr2:99251600-99302000	Weak transcription	Brain Angular Gyrus	brain
7	chr2:99251600-99306600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:99253200-99293000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:99255600-99306800	Weak transcription	Colonic Mucosa	Colon
10	chr2:99256400-99296000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr2:99259000-99281800	Weak transcription	Left Ventricle	heart
12	chr2:99260000-99288000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr2:99260600-99290400	Weak transcription	Liver	Liver
14	chr2:99260600-99290800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr2:99264600-99299000	Weak transcription	Colon Smooth Muscle	Colon
16	chr2:99265200-99291800	Weak transcription	Placenta	Placenta
17	chr2:99265400-99290800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr2:99265600-99306600	Weak transcription	Lung	lung
19	chr2:99265800-99303800	Weak transcription	Brain Substantia Nigra	brain
20	chr2:99266200-99290400	Weak transcription	Adipose Nuclei	Adipose
21	chr2:99266200-99296200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr2:99266400-99304200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr2:99267600-99284200	Weak transcription	Fetal Intestine Small	intestine
24	chr2:99270600-99293800	Strong transcription	HepG2	liver
25	chr2:99271800-99288800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr2:99271800-99289400	Weak transcription	Primary B cells from peripheral blood	blood
27	chr2:99272200-99289000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr2:99272400-99280200	Strong transcription	Dnd41	blood
29	chr2:99273600-99294600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr2:99274400-99280200	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr2:99275600-99280800	Weak transcription	NHEK	skin
32	chr2:99275800-99280800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr2:99276000-99285800	Weak transcription	Pancreas	Pancrea
34	chr2:99276000-99301400	Weak transcription	Aorta	Aorta
35	chr2:99276200-99284800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr2:99276800-99281400	Flanking Active TSS	Primary T cells from cord blood	blood
37	chr2:99277400-99280600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr2:99277600-99280200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
39	chr2:99277600-99291000	Weak transcription	Brain Anterior Caudate	brain
40	chr2:99277600-99291200	Weak transcription	Brain Hippocampus Middle	brain
41	chr2:99277800-99280400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
42	chr2:99277800-99287400	Weak transcription	Primary hematopoietic stem cells	blood
43	chr2:99278000-99296200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr2:99278200-99290400	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr2:99278600-99280200	Active TSS	Primary T cells fromperipheralblood	blood
46	chr2:99278600-99280200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
47	chr2:99278600-99280200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr2:99278600-99280200	Active TSS	Fetal Thymus	thymus
49	chr2:99278600-99280800	Weak transcription	Gastric	stomach
50	chr2:99278600-99281800	Weak transcription	Fetal Intestine Large	intestine

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