Variant report

Variant	rs61164256
Chromosome Location	chr3:140191727-140191728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140185147..140188078-chr3:140189944..140194087,5	MCF-7	breast:
2	chr3:140184688..140187114-chr3:140190424..140192201,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs58189633	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs58295092	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs58620120	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs59314875	0.82[AFR][1000 genomes]
rs60209606	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs61110020	0.90[AMR][1000 genomes]
rs6786587	0.82[AFR][1000 genomes]
rs6789331	0.88[AFR][1000 genomes]
rs72987112	0.90[AMR][1000 genomes]
rs72987140	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72991079	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72991084	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv34489	chr3:140009020-140469302	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2757012	chr3:140009220-140460228	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv591863	chr3:140126067-140274442	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140185600-140192000	Enhancers	NHDF-Ad	bronchial
2	chr3:140185800-140192200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:140186000-140192400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:140186600-140191800	Weak transcription	HMEC	breast
5	chr3:140186600-140197800	Weak transcription	Adipose Nuclei	Adipose
6	chr3:140187400-140193600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:140187600-140194800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:140188600-140195800	Weak transcription	Ovary	ovary
9	chr3:140189400-140192200	Enhancers	Osteobl	bone
10	chr3:140189600-140192200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:140189800-140192400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:140190000-140192200	Enhancers	A549	lung
13	chr3:140190200-140191800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr3:140191000-140191800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:140191000-140191800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr3:140191000-140192200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr3:140191200-140192000	Enhancers	NH-A	brain
18	chr3:140191400-140192000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:140191400-140192000	Weak transcription	HSMMtube	muscle
20	chr3:140191400-140192200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:140191600-140192000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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