Variant report

Variant	rs61164975
Chromosome Location	chr9:85338807-85338808
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11139717	0.85[AFR][1000 genomes]
rs1332462	0.97[AFR][1000 genomes]
rs61258447	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85331800-85345000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:85336000-85344800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:85336400-85344600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr9:85337200-85344800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:85337400-85344800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr9:85337400-85345000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr9:85338800-85339000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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