Variant report

Variant	rs61172548
Chromosome Location	chr7:98859283-98859284
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs60470212	0.81[AFR][1000 genomes]
rs61742315	0.91[AFR][1000 genomes]
rs73395595	0.81[AFR][1000 genomes]
rs73407270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408909	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98853400-98864600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr7:98853600-98863200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:98853600-98864400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:98857200-98860000	Weak transcription	Right Atrium	heart
5	chr7:98858600-98860200	Enhancers	Pancreas	Pancrea
6	chr7:98858800-98859600	Enhancers	Stomach Mucosa	stomach
7	chr7:98859000-98859600	Enhancers	Esophagus	oesophagus
8	chr7:98859200-98859400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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