Variant report

Variant	rs61173769
Chromosome Location	chr2:100257359-100257360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100256848..100260746-chr2:100260857..100263366,4	K562	blood:
2	chr2:100256848..100259824-chr2:100260990..100263145,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs59404019	0.81[AFR][1000 genomes]
rs59718780	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72966250	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72966268	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72966270	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72966276	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73964183	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv962113	chr2:100022168-100317461	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100217000-100258400	Weak transcription	Primary T cells from cord blood	blood
2	chr2:100251800-100258400	Enhancers	Fetal Muscle Leg	muscle
3	chr2:100252400-100263800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:100253200-100308800	Weak transcription	Gastric	stomach
5	chr2:100253600-100260000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr2:100253600-100260400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr2:100253600-100260400	Weak transcription	Psoas Muscle	Psoas
8	chr2:100253600-100260600	Weak transcription	Brain Substantia Nigra	brain
9	chr2:100253800-100257400	Weak transcription	Fetal Lung	lung
10	chr2:100253800-100257400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr2:100253800-100260400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr2:100254000-100257400	Weak transcription	Right Ventricle	heart
13	chr2:100254000-100259800	Weak transcription	Brain Germinal Matrix	brain
14	chr2:100254000-100260000	Weak transcription	Right Atrium	heart
15	chr2:100254000-100260400	Weak transcription	Brain Hippocampus Middle	brain
16	chr2:100254000-100265000	Weak transcription	Spleen	Spleen
17	chr2:100254400-100260000	Weak transcription	Adipose Nuclei	Adipose
18	chr2:100254600-100258200	Weak transcription	Fetal Brain Male	brain
19	chr2:100255000-100257600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr2:100255200-100257600	Enhancers	Thymus	Thymus
21	chr2:100255200-100260200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr2:100255400-100268600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr2:100255400-100285400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr2:100255400-100285400	Weak transcription	Dnd41	blood
25	chr2:100256000-100257400	Weak transcription	Pancreas	Pancrea
26	chr2:100256400-100257800	Enhancers	Ovary	ovary
27	chr2:100256600-100257800	Enhancers	Colon Smooth Muscle	Colon
28	chr2:100256600-100257800	Enhancers	Fetal Heart	heart
29	chr2:100256600-100267400	Weak transcription	Fetal Thymus	thymus
30	chr2:100256800-100257600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr2:100256800-100257600	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr2:100256800-100257800	Genic enhancers	Primary B cells from cord blood	blood
33	chr2:100256800-100257800	Enhancers	HSMMtube	muscle
34	chr2:100257200-100257400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr2:100257200-100257600	Enhancers	Fetal Brain Female	brain
36	chr2:100257200-100257600	Enhancers	Left Ventricle	heart
37	chr2:100257200-100257600	Enhancers	Rectal Smooth Muscle	rectum
38	chr2:100257200-100257800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr2:100257200-100258000	Enhancers	Primary B cells from peripheral blood	blood
40	chr2:100257200-100258400	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr2:100257200-100260600	Weak transcription	Fetal Kidney	kidney

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