Variant report

Variant	rs61178006
Chromosome Location	chr2:111895181-111895182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:111893690..111895905-chr2:111918348..111921261,2	MCF-7	breast:
2	chr2:111894630..111898170-chr2:111898785..111903237,6	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10165671	1.00[AMR][1000 genomes]
rs10167160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10182176	1.00[AMR][1000 genomes]
rs10189017	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10190492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10193696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10193890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10196066	1.00[AMR][1000 genomes]
rs10196162	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10196180	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10199467	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10201912	1.00[AMR][1000 genomes]
rs13388484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13389130	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13392035	1.00[AMR][1000 genomes]
rs13402681	1.00[AMR][1000 genomes]
rs13421194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13421457	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28452430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41309782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56866966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59094500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60702028	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6730446	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6739435	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6742633	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6743841	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72948380	1.00[AMR][1000 genomes]
rs72948389	1.00[AMR][1000 genomes]
rs73954946	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73954948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73954949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73954951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73954962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73954963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73954965	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73954977	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73954982	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73954983	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874838	chr2:111376870-112046226	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv834331	chr2:111812139-112004678	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:111881200-111904200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:111881200-111909600	Weak transcription	NHLF	lung
3	chr2:111881200-111912800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:111881600-111897200	Weak transcription	Stomach Mucosa	stomach
5	chr2:111881600-111897400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr2:111881600-111901000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr2:111881600-111904200	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:111881800-111900800	Weak transcription	Fetal Brain Male	brain
9	chr2:111881800-111908600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr2:111881800-111909600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr2:111881800-111919800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr2:111883400-111907800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr2:111883400-111909400	Weak transcription	Aorta	Aorta
14	chr2:111883400-111912600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr2:111883600-111896200	Weak transcription	Gastric	stomach
16	chr2:111883600-111909400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr2:111883600-111909600	Weak transcription	Small Intestine	intestine
18	chr2:111883800-111897000	Weak transcription	HMEC	breast
19	chr2:111883800-111897600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr2:111883800-111898400	Weak transcription	Brain Angular Gyrus	brain
21	chr2:111883800-111904000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr2:111884000-111901600	Weak transcription	Hela-S3	cervix
23	chr2:111884600-111909400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr2:111884800-111925400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr2:111885800-111895200	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr2:111886000-111896000	Weak transcription	HSMMtube	muscle
27	chr2:111886200-111900800	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr2:111886400-111896600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr2:111886800-111896800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr2:111887000-111902600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr2:111887400-111896200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr2:111887400-111912000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr2:111887600-111899400	Weak transcription	Colonic Mucosa	Colon
34	chr2:111887800-111898400	Weak transcription	Fetal Kidney	kidney
35	chr2:111888200-111897200	Weak transcription	A549	lung
36	chr2:111889800-111896200	Weak transcription	Fetal Muscle Leg	muscle
37	chr2:111889800-111900800	Weak transcription	Duodenum Mucosa	Duodenum
38	chr2:111890600-111914400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr2:111891400-111896600	Weak transcription	GM12878-XiMat	blood
40	chr2:111891400-111897200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr2:111891400-111905800	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr2:111891800-111902600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr2:111892400-111896600	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr2:111892400-111899000	Strong transcription	Fetal Intestine Large	intestine
45	chr2:111892600-111895200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr2:111892800-111898000	Strong transcription	Fetal Stomach	stomach
47	chr2:111892800-111898800	Strong transcription	Fetal Intestine Small	intestine
48	chr2:111892800-111903000	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr2:111893000-111897000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr2:111893000-111897800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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