Variant report

Variant	rs61180388
Chromosome Location	chr8:19670214-19670215
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3A	chr8:19670178-19670352	H1-hESC	embryonic stem cell:	n/a	n/a
2	JUND	chr8:19670205-19670501	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr8:19670180-19670437	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:19669332..19671786-chr8:19673916..19676517,3	MCF-7	breast:
2	chr8:19664721..19666469-chr8:19669172..19670993,2	K562	blood:
3	chr8:19656532..19659284-chr8:19668673..19672507,3	K562	blood:
4	chr8:19668752..19670633-chr8:19673215..19675993,4	MCF-7	breast:
5	chr8:19664969..19667659-chr8:19669257..19670993,2	K562	blood:
6	chr8:19668951..19670842-chr8:19672716..19674665,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17091534	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3899017	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57462676	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57837509	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59259846	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59565447	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60329942	0.83[EUR][1000 genomes]
rs60369789	0.95[ASN][1000 genomes]
rs62496731	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67989257	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6981306	0.88[ASN][1000 genomes]
rs6981674	0.96[ASN][1000 genomes]
rs6993525	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7005767	0.84[ASN][1000 genomes]
rs7012358	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7461774	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7822495	0.95[ASN][1000 genomes]
rs7832638	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19670200-19670400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:19670200-19670600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:19670200-19670600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:19670200-19670600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
5	chr8:19670200-19670600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:19670200-19670800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
7	chr8:19670200-19670800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links