Variant report

Variant	rs61181261
Chromosome Location	chr4:87223803-87223804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55855396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56107403	0.88[AFR][1000 genomes]
rs56200719	0.91[AFR][1000 genomes]
rs61187520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6839310	0.98[AFR][1000 genomes]
rs6856862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834267	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73834280	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv999470	chr4:87165663-87514552	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537164	chr4:87165663-87514552	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv934210	chr4:87197339-87325578	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1011494	chr4:87221480-87257453	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87216200-87231200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:87217400-87228200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:87221600-87224400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr4:87221800-87224200	Enhancers	Fetal Lung	lung
5	chr4:87222200-87224000	Enhancers	Fetal Stomach	stomach
6	chr4:87222200-87224600	Enhancers	Brain Substantia Nigra	brain
7	chr4:87222400-87224400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr4:87222400-87239000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:87222600-87225400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:87222800-87224200	Enhancers	Fetal Brain Female	brain
11	chr4:87222800-87224400	Enhancers	Fetal Kidney	kidney
12	chr4:87223000-87224200	Enhancers	Fetal Brain Male	brain
13	chr4:87223800-87224000	Enhancers	Brain Anterior Caudate	brain
14	chr4:87223800-87224200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:87223800-87224200	Enhancers	Brain Hippocampus Middle	brain
16	chr4:87223800-87224400	Enhancers	Brain Angular Gyrus	brain
17	chr4:87223800-87224400	Enhancers	Brain Germinal Matrix	brain
18	chr4:87223800-87224800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr4:87223800-87225000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:87223800-87228000	Weak transcription	Brain Cingulate Gyrus	brain

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