Variant report

Variant	rs61196230
Chromosome Location	chr18:45326975-45326976
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4939632	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4939972	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58137461	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8098413	0.81[ASN][1000 genomes]
rs9304357	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45322200-45329200	Weak transcription	Lung	lung
2	chr18:45322200-45331200	Weak transcription	Pancreas	Pancrea
3	chr18:45323600-45329400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr18:45325200-45327400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr18:45326000-45327800	Enhancers	Fetal Brain Male	brain
6	chr18:45326200-45327200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr18:45326200-45327200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr18:45326400-45328400	Enhancers	Ovary	ovary
9	chr18:45326400-45342400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr18:45326600-45327000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr18:45326600-45327400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr18:45326600-45327400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr18:45326800-45327200	Enhancers	Brain Germinal Matrix	brain
14	chr18:45326800-45327400	Enhancers	Fetal Lung	lung
15	chr18:45326800-45327600	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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