Variant report

Variant	rs61197725
Chromosome Location	chr4:6768928-6768929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:6761834..6766024-chr4:6766286..6770008,4	MCF-7	breast:
2	chr4:6746698..6749224-chr4:6768313..6771261,2	MCF-7	breast:
3	chr4:6728845..6730988-chr4:6766751..6769398,2	K562	blood:
4	chr4:6720035..6721877-chr4:6768594..6770482,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73078521	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461190	chr4:6755324-6833794	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv593525	chr4:6755324-6833794	Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6757200-6769400	Weak transcription	Pancreas	Pancrea
2	chr4:6757200-6769400	Weak transcription	Right Atrium	heart
3	chr4:6763600-6769200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr4:6763600-6773000	Enhancers	Fetal Thymus	thymus
5	chr4:6764200-6769200	Weak transcription	HSMMtube	muscle
6	chr4:6765600-6769000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr4:6765600-6769400	Weak transcription	Esophagus	oesophagus
8	chr4:6765600-6769400	Weak transcription	A549	lung
9	chr4:6765600-6770000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:6765600-6771000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:6765600-6781400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:6765800-6773800	Weak transcription	Hela-S3	cervix
13	chr4:6766000-6769200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:6766000-6769200	Weak transcription	K562	blood
15	chr4:6766400-6769200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr4:6766600-6769200	Weak transcription	Placenta	Placenta
17	chr4:6767600-6773200	Enhancers	Fetal Intestine Small	intestine
18	chr4:6767800-6770000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr4:6767800-6770800	Enhancers	Spleen	Spleen
20	chr4:6767800-6776200	Enhancers	Duodenum Mucosa	Duodenum
21	chr4:6768000-6769200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr4:6768200-6769000	Enhancers	HepG2	liver
23	chr4:6768200-6769600	Weak transcription	Primary T cells from cord blood	blood
24	chr4:6768200-6770200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr4:6768400-6769200	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr4:6768400-6770600	Weak transcription	Small Intestine	intestine
27	chr4:6768400-6770800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr4:6768600-6771000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:6768800-6772800	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links