Variant report

Variant	rs61199728
Chromosome Location	chr15:73206746-73206747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55993792	1.00[AFR][1000 genomes]
rs74021526	0.83[AFR][1000 genomes]
rs74021527	1.00[AFR][1000 genomes]
rs74021536	1.00[AFR][1000 genomes]
rs74021538	1.00[AFR][1000 genomes]
rs74021539	1.00[AFR][1000 genomes]
rs74021542	1.00[AFR][1000 genomes]
rs74021543	1.00[AFR][1000 genomes]
rs74021555	1.00[AFR][1000 genomes]
rs74021556	1.00[AFR][1000 genomes]
rs74021557	1.00[AFR][1000 genomes]
rs74021565	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73204800-73209200	Weak transcription	Fetal Intestine Small	intestine
2	chr15:73204800-73212200	Weak transcription	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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