Variant report

Variant	rs61205046
Chromosome Location	chr22:29232862-29232863
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:29227240..29229282-chr22:29232209..29234813,2	MCF-7	breast:
2	chr22:29190538..29192302-chr22:29232291..29234137,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16986711	0.88[ASN][1000 genomes]
rs16986719	0.88[ASN][1000 genomes]
rs16986739	0.88[ASN][1000 genomes]
rs59025667	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60740682	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9625587	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv834169	chr22:29095446-29303929	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29214800-29242200	Weak transcription	Aorta	Aorta
2	chr22:29216000-29233800	Weak transcription	Left Ventricle	heart
3	chr22:29216000-29238600	Weak transcription	Spleen	Spleen
4	chr22:29219400-29234800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr22:29224000-29237400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr22:29225400-29242000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr22:29225800-29233000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr22:29226000-29233000	Weak transcription	Dnd41	blood
9	chr22:29226000-29248800	Weak transcription	Primary T cells from cord blood	blood
10	chr22:29226200-29234600	Weak transcription	Brain Substantia Nigra	brain
11	chr22:29226200-29234800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr22:29226200-29239600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr22:29226200-29242800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr22:29226600-29241800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr22:29226600-29242200	Weak transcription	Fetal Muscle Leg	muscle
16	chr22:29227800-29235000	Weak transcription	Liver	Liver
17	chr22:29229400-29241800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr22:29230400-29236800	Weak transcription	Fetal Stomach	stomach
19	chr22:29231200-29239200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr22:29232200-29233800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr22:29232200-29234600	Weak transcription	Fetal Intestine Large	intestine
22	chr22:29232200-29235600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr22:29232600-29236000	Weak transcription	Fetal Intestine Small	intestine

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