Variant report

Variant	rs61211756
Chromosome Location	chr1:62851715-62851716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:62851538..62854000-chr1:62900356..62902478,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162607	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72913238	0.83[AMR][1000 genomes]
rs72929730	0.83[AMR][1000 genomes]
rs7523145	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013582	chr1:62723703-62910632	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62848000-62855400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:62848000-62871800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:62849400-62851800	Enhancers	Gastric	stomach
4	chr1:62849400-62852000	Enhancers	Fetal Muscle Leg	muscle
5	chr1:62849600-62852000	Enhancers	Brain Substantia Nigra	brain
6	chr1:62849600-62852200	Enhancers	Fetal Stomach	stomach
7	chr1:62849800-62851800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:62849800-62853000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:62849800-62853600	Enhancers	Hela-S3	cervix
10	chr1:62850000-62852400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:62850000-62852800	Enhancers	Adipose Nuclei	Adipose
12	chr1:62850000-62853400	Enhancers	Stomach Mucosa	stomach
13	chr1:62850200-62852800	Enhancers	Fetal Lung	lung
14	chr1:62850200-62853400	Enhancers	Fetal Intestine Large	intestine
15	chr1:62850200-62853400	Enhancers	Fetal Intestine Small	intestine
16	chr1:62850400-62851800	Weak transcription	Brain Angular Gyrus	brain
17	chr1:62850400-62852000	Enhancers	Fetal Heart	heart
18	chr1:62850400-62852800	Weak transcription	Pancreas	Pancrea
19	chr1:62850600-62851800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr1:62850600-62852000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr1:62850600-62855400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr1:62851000-62851800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:62851000-62852000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr1:62851000-62852000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:62851000-62852000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr1:62851000-62852000	Enhancers	Fetal Muscle Trunk	muscle
27	chr1:62851000-62852000	Weak transcription	HSMMtube	muscle
28	chr1:62851000-62852200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr1:62851400-62851800	Weak transcription	Brain Hippocampus Middle	brain
30	chr1:62851400-62852600	Enhancers	Brain Germinal Matrix	brain
31	chr1:62851600-62852000	Enhancers	Fetal Thymus	thymus
32	chr1:62851600-62852600	Flanking Active TSS	HepG2	liver
33	chr1:62851600-62852800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr1:62851600-62852800	Enhancers	NH-A	brain
35	chr1:62851600-62853000	Enhancers	Liver	Liver
36	chr1:62851600-62853000	Enhancers	Fetal Kidney	kidney

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