Variant report

Variant	rs61212823
Chromosome Location	chr12:12272220-12272221
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MANSC1-2	chr12:12268963-12272807	NONHSAT026963

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57170747	1.00[AMR][1000 genomes]
rs61445660	1.00[EUR][1000 genomes]
rs7139259	1.00[EUR][1000 genomes]
rs73285757	1.00[AMR][1000 genomes]
rs73285771	1.00[AMR][1000 genomes]
rs73285773	1.00[AMR][1000 genomes]
rs74061110	1.00[EUR][1000 genomes]
rs74061119	1.00[EUR][1000 genomes]
rs74061139	1.00[EUR][1000 genomes]
rs74061144	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv529005	chr12:12254756-12412795	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv3427115	chr12:12262415-12432411	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	nsv898806	chr12:12264471-12453808	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12235400-12278800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr12:12241000-12273400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr12:12241400-12272600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr12:12252800-12276200	Weak transcription	Fetal Heart	heart
5	chr12:12258200-12274000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr12:12260800-12273400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr12:12260800-12276000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr12:12260800-12277000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr12:12261000-12276800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr12:12261200-12273000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr12:12261200-12273400	Weak transcription	HSMMtube	muscle
12	chr12:12261200-12274000	Weak transcription	Ovary	ovary
13	chr12:12261200-12277000	Weak transcription	Hela-S3	cervix
14	chr12:12261400-12275800	Weak transcription	NH-A	brain
15	chr12:12261600-12301400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr12:12261800-12288000	Weak transcription	Gastric	stomach
17	chr12:12262200-12277200	Weak transcription	Brain Germinal Matrix	brain
18	chr12:12262400-12277200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr12:12262400-12335600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr12:12262600-12272400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr12:12262800-12272600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr12:12262800-12273000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr12:12262800-12273400	Weak transcription	Left Ventricle	heart
24	chr12:12262800-12284800	Weak transcription	Aorta	Aorta
25	chr12:12263800-12314600	Weak transcription	Esophagus	oesophagus
26	chr12:12264000-12301400	Weak transcription	Right Ventricle	heart
27	chr12:12264200-12284600	Weak transcription	Pancreas	Pancrea
28	chr12:12264400-12273000	Weak transcription	Placenta	Placenta
29	chr12:12264400-12273200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr12:12264400-12273400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr12:12264400-12284800	Weak transcription	Lung	lung
32	chr12:12264400-12311400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr12:12264600-12273200	Weak transcription	Fetal Intestine Large	intestine
34	chr12:12264600-12276400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr12:12265400-12279000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr12:12265600-12303400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr12:12266000-12274000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr12:12266600-12273200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr12:12266800-12276000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr12:12266800-12276400	Weak transcription	HMEC	breast
41	chr12:12267200-12273400	Weak transcription	NHEK	skin
42	chr12:12267200-12276200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr12:12267800-12273800	Weak transcription	Fetal Stomach	stomach
44	chr12:12267800-12282400	Weak transcription	Fetal Intestine Small	intestine
45	chr12:12267800-12301600	Weak transcription	NHLF	lung
46	chr12:12268200-12273400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr12:12268200-12277400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr12:12268400-12279000	Weak transcription	Colon Smooth Muscle	Colon
49	chr12:12268600-12273600	Weak transcription	Brain Angular Gyrus	brain
50	chr12:12268800-12273000	Weak transcription	Fetal Muscle Leg	muscle

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