Variant report

Variant	rs61214839
Chromosome Location	chr17:14938283-14938284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58753332	1.00[AMR][1000 genomes]
rs73980992	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059356	chr17:14539984-14989685	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1055358	chr17:14612995-14958513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1064686	chr17:14897967-15046005	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:14937000-14939400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:14937200-14939400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:14937200-14939400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr17:14937200-14941800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr17:14937200-14942000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr17:14937200-14942000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr17:14937400-14939000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr17:14937400-14941800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr17:14937600-14939400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr17:14937600-14939800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr17:14937600-14942400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr17:14937600-14945600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr17:14937600-14945600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links